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Spatial Atlas Links Maternal Gut-Immune Disruption to Sex-Specific Changes in the Developing Brain

A Nature Neuroscience mouse study uses MERFISH to map immune gene networks, highlighting CXCL12/CXCR7 as a candidate mediator.

Overview

  • The peer-reviewed study, led by Boston Children's Hospital neonatologist Brian Kalish, maps how maternal microbiome shifts or immune activation reshape fetal brain immune signaling.
  • Researchers integrated high-resolution MERFISH spatial transcriptomics with single-cell RNA sequencing to build a developmental atlas of immune gene expression in embryonic mouse brains.
  • Experiments modeled mid- and late-gestation by inducing maternal immune activation or depleting the microbiome with antibiotics to examine independent and combined effects.
  • Male embryos showed reduced neuronal proliferation and abnormal migration after maternal gut-immune perturbations, with dysregulation of the CXCL12–CXCR7 chemokine axis implicated.
  • The resource provides a publicly reported spatial transcriptomic dataset and preclinical insights that may inform future early interventions but require further validation.