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Researchers Release AI-Driven Tool for Custom CRISPR-Cas9 Enzyme Design

PAMmla, a machine learning framework, predicts bespoke Cas9 enzymes with enhanced precision, now validated in human cells and mice for therapeutic applications.

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Overview

  • PAMmla, developed by researchers at Massachusetts General Hospital and Harvard Medical School, uses machine learning to design Cas9 enzymes tailored to specific genomic targets.
  • The algorithm analyzed approximately 64 million SpCas9 variants, identifying enzymes with improved specificity and reduced off-target effects compared to existing tools.
  • Validation experiments successfully corrected the P23H rhodopsin mutation, a cause of autosomal dominant retinitis pigmentosa, in both human cells and a mouse model.
  • A publicly available web tool now enables researchers to customize Cas9 proteins for diverse research and therapeutic uses.
  • The scalable workflow offers potential for expansion to other genome-editing technologies, including base, prime, and click editors.