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Otter Scat Reveals Parasite Networks and Fish-Crab Diet in Chesapeake Bay

Analyses of 18 shoreline latrines reveal a predominantly fish-crab diet alongside diverse parasite assemblages that position otters as ecosystem sentinels

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A North American river otter, Lontra canadensis, wanders through a forest at the Smithsonian Environmental Research Center.  (Calli Wise, Smithsonian Environmental Research Center/Courtesy)

Overview

  • Scat samples collected over nine to eleven months from 18 active latrines on the Rhode River show 93% of prey DNA derives from finfish and crabs, including invasive common carp and white river crayfish.
  • Microscopy and DNA metabarcoding detected parasites from six taxonomic classes—predominantly trematodes—most of which infect otters’ prey rather than the otters themselves.
  • Otter latrines were frequently found on docks, boardwalks, and natural shorelines, illustrating how these predators use human-modified structures for scent-marking, foraging, and social behavior.
  • Researchers suggest that by preferentially preying on parasite-infected animals, river otters may influence prey population health and serve as practical environmental sentinels for monitoring ecosystem and public health risks.
  • Key study limitations include gaps in parasite reference databases, inability to assign scat to individual otters, and no confirmed human-infecting parasites, driving recommendations for targeted follow-up research.