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New Cell Study Maps India’s 50,000-Year Genetic Legacy

The findings promise to guide precision health strategies across India’s diverse communities.

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Indians attend Dussehra celebrations on the outskirts of New Delhi, India, Friday, Oct. 3, 2014. A new UC Berkeley study on India's genetic makeup not only reveals the history of South Asia's ancestry, but also how that genetic history affects predisposition to disease.

Overview

  • Published in Cell on June 26, the study sequenced whole genomes of 2,762 individuals from the LASI-DAD cohort to represent most of India’s ethno-linguistic diversity.
  • Modern Indian genomes derive from three main ancestral populations—South Asian hunter-gatherers, Neolithic Iranian farmers and Eurasian Steppe pastoralists—that intermingled over the past 10,000 years.
  • India harbors the highest variation in Neanderthal ancestry among non-Africans, enabling reconstruction of about 50% of the Neanderthal genome and 20% of the Denisovan genome.
  • Community endogamy established between 3,000 and 5,000 years ago caused genetic bottlenecks that increased the prevalence of deleterious variants in many groups.
  • Researchers identified numerous rare, population-specific pathogenic variants linked to blood disorders, congenital hearing loss, cystic fibrosis and other conditions.