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Nature Study Cultures Hundreds of Human Gut Phages, Revealing Diet- and Host-Triggered Activation

The work establishes a lab platform that exposes how human biology cues viral behavior.

Overview

  • The international team isolated and experimentally characterized temperate bacteriophages from 252 anaerobically cultured gut bacterial isolates sourced from AusMiCC.
  • Screening 10 compounds and conditions identified Stevia and human gut–cell–derived factors as potent inducers that can awaken otherwise dormant phages.
  • Researchers validated 134 inducible prophages, finding only 18% of computationally predicted prophages activate in pure cultures under tested conditions.
  • A 78-member synthetic microbiome co-cultured with human colonic cells led to induction of 35% of phage species, indicating strong host influence on viral activity.
  • CRISPR-based edits uncovered viral gene mutations that block induction, and the authors describe potential future microbiome therapeutics and engineered probiotics as longer-term goals following this foundational work.