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Mount Sinai AI Scores Disease Risk From Rare Genetic Variants Using Routine Labs

The Science study introduces AI-derived penetrance scores to clarify ambiguous genetic test results.

Overview

  • Researchers reported in Science on August 28 a machine-learning method that estimates variant penetrance for inherited conditions.
  • Models trained on more than 1.3 million electronic health records generated continuous 0–1 risk scores for 1,648 rare variants across 31 genes and 10 autosomal-dominant diseases.
  • The approach linked genotype to routine lab measures and found that some variants labeled uncertain showed disease signals, whereas some presumed pathogenic variants showed little effect.
  • Authors say the scores are an adjunct to clinical judgment that could inform earlier screening or help avoid unnecessary interventions when risk appears low.
  • Planned work includes expanding to additional diseases and variant types, testing in more diverse populations, and longitudinal follow-up to confirm predictive value.