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Largest Whole-Genome Survey Charts 50,000 Years of Indian Ancestry

Published in Cell on June 26, the LASI-DAD analysis reveals deep genetic structure across India as researchers extend sequencing into aging and disease research.

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Indians attend Dussehra celebrations on the outskirts of New Delhi, India, Friday, Oct. 3, 2014. A new UC Berkeley study on India's genetic makeup not only reveals the history of South Asia's ancestry, but also how that genetic history affects predisposition to disease.

Overview

  • The LASI-DAD team sequenced whole genomes of 2,762 individuals across major linguistic, ethnic and geographic groups to capture India’s genetic diversity.
  • Most modern Indian genetic variation stems from a single out-of-Africa migration about 50,000 years ago followed by interbreeding with Neanderthals and Denisovans.
  • Researchers identified three primary ancestral components—South Asian hunter-gatherers, Neolithic Iranian farmers and Eurasian Steppe pastoralists—shaping present-day genomes.
  • Strong endogamous practices 3,500–5,000 years ago created population bottlenecks and elevated homozygosity, contributing to recessive disease risk in specific communities.
  • The LASI-DAD sequencing effort is expanding to integrate ancestry and homozygosity into precision health research on aging and disease across Indian populations.