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E. coli Strain Engineered With Record-Compressed 57-Codon Genome

Researchers are optimizing the strain's reduced growth rate to prepare for virus-proof microbial factories

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Overview

  • Scientists recoded the entire 4-megabase E. coli genome with over 100,000 synonymous edits to operate using only 57 of the natural 64 codons.
  • The redesigned genome was built from 38 synthetic DNA fragments of roughly 100 kilobases each, with fitness screening after each assembly step.
  • Syn57 grows about four times slower than its natural counterpart and displays a distinct global gene expression profile indicating broad physiological adaptation.
  • Next steps include improving the slow growth phenotype and removing transfer RNAs for the freed codons to assess the strain’s functional utility.
  • Freed codons create opportunities for creating virus-resistant microbes and incorporating non-natural amino acids in industrial biomanufacturing applications.