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Ancient Viral MER11_G4 Elements Drive Gene Activation in Primates

Using a novel phylogenetic framework with high-throughput lentiMPRA assays, researchers show how the youngest MER11_G4 subfamily co-opted viral sequences to control gene activity in primate cells.

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Overview

  • Researchers reclassified the MER11 transposable element family into four subfamilies (G1–G4) based on evolutionary conservation across primate genomes.
  • LentiMPRA assays in human stem and early neural cells tested nearly 7,000 MER11 sequences from humans, chimpanzees and macaques to assess regulatory activity.
  • The youngest MER11_G4 subfamily exhibited strong gene activation and bound a distinct set of transcription factors compared with older subfamilies.
  • Comparative analysis revealed species-specific mutations in MER11_G4 sequences that contribute to divergent regulatory functions and primate speciation.
  • Published in Science Advances, the study establishes a framework for understanding how ancient viral DNA has been repurposed into essential genome regulatory elements.