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Ancient Gene Regulation Predates Bilaterians by 150 Million Years

New research reveals that distal gene control mechanisms emerged 650–700 million years ago, reshaping our understanding of early animal evolution.

comb jelly
Image
Illustration of a DNA molecule. Image credit: Christoph Bock, Max Planck Institute for Informatics / CC BY-SA 3.0.

Overview

  • A Nature study shows that long-distance gene regulation, or distal regulation, evolved 650–700 million years ago, much earlier than previously believed.
  • Scientists mapped 3D genome structures in 11 early-branching animal species, including comb jellies, placozoans, and cnidarians, using the Micro-C technique.
  • Comb jellies, such as Mnemiopsis leidyi, were found to have over 4,000 DNA loops despite their compact genomes, highlighting the complexity of their gene regulation.
  • Unlike vertebrates, which use the CTCF protein for chromatin looping, early animals rely on an alternative architectural protein, showcasing multiple evolutionary solutions.
  • These findings offer new insights into how early multicellular animals developed specialized cell types and tissues, advancing our understanding of evolutionary biology and potential biomedical applications.