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AI Identifies Thousands of Potential Antibiotics in Archaea

The team will refine structural modelling for archaeasins to support comprehensive safety studies ahead of clinical evaluation.

Torres et al. synthesized 80 archaeasins, 93% of which showed antimicrobial activity in vitro against Acinetobacter baumannii, Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, Staphylococcus aureus and Enterococcus spp. Image credit: Torres et al., doi: 10.1038/s41564-025-02061-0.
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Overview

  • Researchers retrained the AI tool APEX 1.1 to scan proteomes of 233 archaeal species, uncovering 12,623 candidate antimicrobial peptides dubbed archaeasins.
  • Eighty archaeasins were synthesized and 93% showed in vitro activity against drug-resistant pathogens including E. coli, S. aureus and P. aeruginosa.
  • In animal infection models, three archaeasins arrested a hospital-acquired drug-resistant bacterium within four days, with one matching the efficacy of polymyxin B.
  • Chemical analysis revealed archaeasins differ from known antimicrobial peptides in electric charge distribution and likely disrupt bacterial electrical signalling internally.
  • Authors plan to enhance APEX’s structural prediction capabilities and conduct further efficacy and toxicity testing as they advance toward human trials.